Intel® MPI Library Developer Guide for Linux* OS

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ID 768728
Date 12/16/2022
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Document Table of Contents
Document Table of Contents x
Intel® MPI Library Developer Guide for Linux* OS
Intel® MPI Library Developer Guide for Linux* OS x
Introduction Installation and Prerequisites Compiling and Linking Running Applications Debugging Applications Analysis and Tuning Troubleshooting Additional Supported Features Examples Notices and Disclaimers
Introduction x
Introducing Intel® MPI Library Conventions and Symbols Related Information
Installation and Prerequisites x
Installation Prerequisite Steps
Compiling and Linking x
Compiling an MPI Program Compilers Support ILP64 Support
Running Applications x
Running Intel® MPI Library in Containers Selecting a Library Configuration Running an MPI Program Running an MPI/OpenMP* Program MPMD Launch Mode Fabrics Control Job Schedulers Support Controlling Process Placement Java* MPI Applications Support
Running Intel® MPI Library in Containers x
Build a Singularity* Container for an MPI Application Run the Application with a Container
Fabrics Control x
Selecting Fabrics Libfabric* Support OFI* Providers Support
Debugging Applications x
Debugging Using -gtool for Debugging
Analysis and Tuning x
Displaying MPI Debug Information Tracing Applications Interoperability with Other Tools Through -gtool MPI Tuning
Troubleshooting x
Error Message: Bad Termination Error Message: No such file or Directory Error Message: Permission Denied Error Message: Fatal Error Error Message: Bad File Descriptor Error Message: Too Many Open Files Problem: High Memory Consumption Readings Problem: MPI Application Hangs Problem: Password Required Problem: Cannot Execute Binary File Problem: MPI limitation for Docker*
Additional Supported Features x
Asynchronous Progress Control Multiple Endpoints Support
Multiple Endpoints Support x
MPI_THREAD_SPLIT Programming Model Threading Runtimes Support Program Examples Code Change Guide
Examples x
async_progress_sample.c thread_split.cpp thread_split_omp_for.c thread_split_omp_task.c thread_split_pthreads.c
Intel® MPI Library Developer Guide for Linux* OS

Error Message: Bad File Descriptor

Error Message

[mpiexec@node00] HYD_sock_write (../../../../../src/pm/i_hydra/libhydra/sock/hydra_sock_intel.c:353): write error (Bad file descriptor)
[mpiexec@node00] cmd_bcast_root (../../../../../src/pm/i_hydra/mpiexec/mpiexec.c:147): error sending cwd cmd to proxy
[mpiexec@node00] stdin_cb (../../../../../src/pm/i_hydra/mpiexec/mpiexec.c:324): unable to send response downstream
[mpiexec@node00] HYDI_dmx_poll_wait_for_event (../../../../../src/pm/i_hydra/libhydra/demux/hydra_demux_poll.c:79): callback returned error status
[mpiexec@node00] main (../../../../../src/pm/i_hydra/mpiexec/mpiexec.c:2064): error waiting for event

or: 

[mpiexec@host1] wait_proxies_to_terminate (../../../../../src/pm/i_hydra/mpiexec/intel/i_mpiexec.c:389): downstream from host host2 exited with status 255

Cause

The remote hydra_pmi_proxy process is unavailable due to:

  • the host reboot;
  • an unexpected signal received;
  • out-of-memory manager (OOM) errors;
  • job termination by the Job Scheduler (PBS Pro*,  SLURM*) in case of resources limitation (for example, walltime or cputime limitation).

Solution

  1. Check the system log files.
  2. Try to find the reason of the hydra_pmi_proxy process termination and fix the issue.
Parent topic: Troubleshooting
Level Two Title