You can't assign the unused VREF pins as user IO in Cyclone® V GX FPGA device.
Please refer to Cyclone® V GX FPGA Pin Connection Guideline page 7: "If the VREF pins are not used, you should connect them to either the VCCIO in the bank in which the pin resides or GND."
Please ignore the information found in Cyclone® V Device Handbook: /content/dam/www/programmable/us/en/pdfs/literature/hb/cyclone-v/cv_5v1.pdf (P17)
that mention "Unused voltage reference (VREF) pins that can be configured as user I/Os".
Instead, you can refer to the updated handbook from this link: https://www.intel.com/content/www/us/en/docs/programmable/683375/current/logic-array-blocks-and-adaptive-logic-24877.html