Description
Design using Arria V ES with hard memory controller compiles fine in quartus and you can program the board successfully. However the design will have problem to work properly on board.
Resolution
Create a quartus.ini file that include the below settings in the INI file. This quartus.ini file should be save in the quartus project directory.
PGM_CONFIG_IO_A5 = ON
PGM_A5ES_IOCSR_RECONFIG=ON