Description
Yes. The auto-compute Tj in EPE version 6.0.1 does not take into account transceiver power which would be needed to accurately estimate power for Stratix® II GX devices.
As a workaround, you should continue to use EPE version 6.0.1 but enter a custom Tj value when you are targeting Stratix II GX.
This will be fixed in a future version of the EPE.